Bioconductor Dna methylation

Showing : dna methylation • reset

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1.5k

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minfi cell proportion estimateCellCounts DNA Methylation

5.9 years ago grayapply2009 • 0

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3.2k

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normalization DNA methylation WGCNA

updated 6.6 years ago by Peter Langfelder ★ 3.0k • written 6.6 years ago by enora.fremy • 0

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1.5k

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medips medip-seq dna methylation dmr analysis

updated 7.2 years ago by Lukas Chavez ▴ 570 • written 7.2 years ago by mtefit • 0

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2.4k

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R gdc rna-seq dna methylation

updated 7.3 years ago by Sean Davis 21k • written 7.3 years ago by RichardJActon ▴ 50

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2.1k

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minfi normalization outliers dna methylation densityplot

7.5 years ago peter.fransquet • 0

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1.1k

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differential variability dna methylation iEVORA DVP

7.8 years ago poojitha.stemcell ▴ 10

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1.5k

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rnbeads methylation methylationepic dna methylation

8.0 years ago gabrielrfries • 0

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1.5k

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dna methylation biseq

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by ahmad.moousavi • 0

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2.6k

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tcgabiolinks dna methylation

updated 8.2 years ago by Marcel Ramos 700 • written 8.2 years ago by michaelwxf2012 • 0

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2.6k

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dna methylation illimina 450k methylation beta M significance

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by skids121 • 0

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1.7k

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CNV minfi preprocessing dna methylation

8.9 years ago Thomas • 0

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1.5k

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microarray HM450 dna methylation cohcap

updated 9.1 years ago by James W. MacDonald 68k • written 9.1 years ago by poojitha.stemcell ▴ 10

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1.5k

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minfi bumphunter DNA methylation illumina450k

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k